All these are from the extended
Daybreak.
The scene where new sleeper agent Boomer wakes up and learns about Troy's accident (the Captain Sarah Alchemer tells her... see my last fic) is a deleted scene.
Here are the
Daybreak deleted scenes:
http://www.youtube.com/watch?v=8_E--yiLTycNo Gina/Boomer scene. Maybe it's in
The Plan (and Propworx's catalog was inaccurate), or it's a "super secret" deleted scene. (not even filmed???)